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A value set definition is a class that has member properties and the value of each membet is a class expression i.e a Value set has members who are concept expressions. | A value set definition is a class that has member properties and the value of each membet is a class expression i.e a Value set has members who are concept expressions. | ||
A Class expression may be a simple pre-cordinated concepts such as a term like SN_1<span style="color:#8e44ad;">240751000000100 |Coronavirus disease 19 caused by severe acute respiratory syndrome coronavirus 2 (disorder)</span>| | A Class expression may be a simple pre-cordinated concepts such as a term like SN_1<span style="color:#8e44ad;">240751000000100 |Coronavirus disease 19 caused by severe acute respiratory syndrome coronavirus 2 (disorder)</span>|or may be a complex class such as : | ||
<span style="color:#8e44ad;">Covid 19 {</span><span style="color:#27ae60;">EquivalentTo</span><span style="color:#8e44ad;"> : Disease </span> | <span style="color:#8e44ad;">Covid 19 {</span><span style="color:#27ae60;">EquivalentTo</span><span style="color:#8e44ad;"> : Disease </span> | ||
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The value set generator returns a list of concepts that are defined by a value set definition for use in queries, thus supporting advanced [[Subsumption_test|subsumption_testing]] against health care records. | The value set generator returns a list of concepts that are defined by a value set definition for use in queries, thus supporting advanced [[Subsumption_test|subsumption_testing]] against health care records. | ||
The value set generator API accepts the IRI of a value set either in full, or relative to a baseline IRI e.g. [http://DiscoveryDataService/InformationModel#VSET_Covid1 http://DiscoveryDataService/InformationModel#VSET_Covid1] or simple VSET_Covid1, and returns a list of concepts to be used in the query. The API supports both core concepts and original codes that have been mapped to the core concepts, depending on whether the database uses Discovery concepts or actual original codes | The [[Value_set_generator_API|value set generator API]] accepts the IRI of a value set either in full, or relative to a baseline IRI e.g. [http://DiscoveryDataService/InformationModel#VSET_Covid1 http://DiscoveryDataService/InformationModel#VSET_Covid1] or simple VSET_Covid1, and returns a list of concepts to be used in the query. The API supports both core concepts and original codes that have been mapped to the core concepts, depending on whether the database uses Discovery concepts or actual original codes | ||
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Revision as of 14:19, 1 May 2020
DRAFT - this article is in a very draft state and must not be relied upon as being up to date or an actual reflection of the world's true state.
The Information model service is a set of services that enables the Discovery common information model to be created, updated, distributed and accessed.
The service includes a set of web applications and a set of APIs to an information model server and an information model distribution service
All components of the service are open source and available at the Discovery Endeavour githubs https://github.com/endeavourhealth and https://github.com/endeavourhealth-discovery
The information model itself is internally defined via the Discovery_information_model_language which is a group of standards based languages with some pragmatic additions that enable the service to operate. Externally, the Information model can be accessed via standards based APIs or by Discovery language based APIs that are supported by the Information model server.
The following lists the functional groupings of the IM Service. Some of these use web applications , some use the information model server, and some use the information model distribution service components that maintain locally owned copies of the information model.
Support for Value sets
The service supports the creation of, maintenance of, distribution of, and access to, value set definitions and value sets, sometimes referred to as reference sets or concept sets.
A value set definition is a definition of a collection of concept expressions that have been brought together for a particular business purpose. A value set definition is different from a standard concept definition because the meaning of some members of a value set may not be subsumed by the implied meaning of the value set. For example a value set for gender which consists of male, female, and other, is different from the concept of gender which may include many more specialised variations.
Value set definitions are described in more detail in the Discovery_Information_model_language specification. In summary:
A value set definition is a class that has member properties and the value of each membet is a class expression i.e a Value set has members who are concept expressions.
A Class expression may be a simple pre-cordinated concepts such as a term like SN_1240751000000100 |Coronavirus disease 19 caused by severe acute respiratory syndrome coronavirus 2 (disorder)|or may be a complex class such as :
Covid 19 {EquivalentTo : Disease
and(causative_agent some coronavirus-2)
and(has_pathological_process some infectious_process)}.
Value sets themselves are the collections of concepts that are defined by the defintion i.e a list of concepts.
Value set editor
The value set editor enables people to create and maintain value set definitions which can then be downloaded, accessed via an API or distributed via the information model distribution service.
Value set run time generator
The value set generator returns a list of concepts that are defined by a value set definition for use in queries, thus supporting advanced subsumption_testing against health care records.
The value set generator API accepts the IRI of a value set either in full, or relative to a baseline IRI e.g. http://DiscoveryDataService/InformationModel#VSET_Covid1 or simple VSET_Covid1, and returns a list of concepts to be used in the query. The API supports both core concepts and original codes that have been mapped to the core concepts, depending on whether the database uses Discovery concepts or actual original codes
Value set distributor
The value set distributor maintains tables of value sets for databases that use local instances of the Discovery information model.
This is part of the information model distribution service that runs on an application server, and is designed to detect changes to the content of the information model and regenerate the value sets from the value set definitions. The value sets are regenerated whenever a value set definition changes or whenever there is an update to the concepts within the information model.